PUBLICATIONS

• Aledo P, Aledo JC. 2023. Proteome-Wide Structural Computations Provide Insights into Empirical Amino Acid Substitution Matrices. Int. J. Mol. Sci. 2023, 24(1), 796. https://doi.org/10.3390/ijms24010796 

• Ortigosa F, Lobato-Fernández C, Pérez-Claros JA, Cantón FR, Ávila C, Cánovas FM, Cañas RA. 2022. Epitranscriptome changes triggered by ammonium nutrition regulate the proteome response of maritime pine roots. Frontiers in Plant Science. 13, 1102044. https://doi.org/10.1101/2021.04.20.440618  

• Valderrama-Martín JM, Ortigosa F, Aledo JC, Ávila C, Cánovas FM, Cañas RA. 2022. A new gene encoding a cytosolic glutamine synthetase in pine is linked to developing tissues. bioRxiv. https://doi.org/10.1101/2022.10.27.514046.
• Aledo JC. 2022. A Census of Human Methionine-Rich Prion-like Domain-Containing Proteins. Antioxidants. 11(7), 1289. https://doi.org/10.3390/antiox11071289

• Aledo JC. 2022. Phylogenies from unaligned proteomes using sequence environments of amino acid residues. Scientific Reports. 12(1), 7497. https://doi.org/10.1038/s41598-022-11370-x

• Aledo JC. 2022. renz: An R package for the analysis of enzyme kinetic data. BMC Bioinformatics. 23(1), 182. https://doi.org/10.1186/s12859-022-04729-4

• Marino D, Cañas RA, Betti M. 2022. Is plastidic glutamine synthetase essential for C₃ plants? A tale of photorespiratory mutants, ammonium tolerance and conifers. New Phytologist. 234(5), 1559-1565. https://doi.org/10.1111/nph.18090

• Valderrama-Martín JM, Ortigosa F, Ávila C, Cánovas FM, Hirel B, Cantón FR, Cañas RA. 2022. A revised view on the evolution of glutamine synthetase isoenzymes in plants. The Plant Journal. 110(4), 946-960. https://doi.org/10.1101/2021.11.08.467771

• Ortigosa F, Lobato-Fernández C, Shikano H, Ávila C, Taira S, Cánovas FM, Cañas RA. 2022. Ammonium regulates the development of pine roots through hormonal crosstalk and differential expression of transcription factors in the apex. Plant, Cell and Environment. 45(3), 915-935 https://doi.org/10.1111/pce.14214

• Aledo JC. 2021. The Role of Methionine Residues in the Regulation of Liquid-Liquid Phase Separation. Biomolecules.11(8), 1248 https://doi.org/10.3390/biom11081248

• Aledo JC. 2021. ptm: an R package for the study of methionine sulfoxidation and other post-translational modifications. Bioinformatics. 37(21), 3979–3980 https://doi.org/10.1093/bioinformatics/btab348

• Aledo JC. 2021. Enzyme kinetic parameters estimation: A tricky task? Biochem. Mol. Biol. Educ.49(4), 633-638 https://doi.org/10.1002/bmb.21522 

• Boughanem, H., Bandera-Merchán, B., Hernández-Alonso, P., Moreno-Morales, N., Tinahones, F., Lozano, J., Morcillo, S., Macías-González, M. 2020. Association Between the APOA2 rs3813627 Single Nucleotide Polymorphism and HDL and APOA1 Levels Through BMI. Biomedicines 8(3), 44 https://doi.org/10.3390/biomedicines8030044